FastQCFastQC Report
Mon 6 Jun 2016
ERR1391391.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391391.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences704779
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AATCGGT250.00211191235.98137742
CTCGTAT401.5652464E-533.73254442
TCGTATG401.5652464E-533.73254443
CGTATGC453.501288E-529.98448444
TCTCGTA453.501288E-529.98448441
CGCGCCC406.187568E-428.10646411
AGACCGG507.186712E-526.98220428
GCTGCGG450.001197081525.102851
ACCGCGC450.001230804424.9835269
CCGGCAC551.3736013E-424.52927831
GACCGGC551.3736013E-424.52927829
CGGCACA551.3736013E-424.52927832
ACCGGCA651.5304582E-524.214830
GATCGGA602.4760328E-422.48676718
ATCTCGT654.250804E-420.75848840
AGATCGG654.2548773E-420.75554317
CCGCGCC550.003950102720.44106510
CACCGCG550.003950102720.4410658
GTATGCC850.002572707815.87413945
ATCGGAA850.002573926215.87301319