FastQCFastQC Report
Mon 6 Jun 2016
ERR1391385.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391385.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457478
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACCGCGC301.1420935E-437.4818739
CACCGCG301.1420935E-437.4818738
CCACCGC654.883186E-727.6789237
AGATCGG608.208221E-626.2373117
ATCGGAA651.5255604E-524.22170419
GCCACCG751.6499635E-624.0725986
GATCGGA754.6081237E-520.99214418
GAGATCG851.2068948E-418.52045616
CGCCCGG1002.0507725E-517.991313
GCGGTTC901.8694796E-417.4915428
CCGAGAC901.8694796E-417.4915445
CGAGATC901.8694796E-417.4915415
TTGCAAC800.001674522416.9260443
CCGGCTA800.001714256216.86684416
CACCACG1752.6921043E-916.7062078
TCGGAAG952.8227468E-416.57274420
AGCGGTT952.8251018E-416.57093427
CCGAGAT952.8251018E-416.57093414
GCCCGGC1501.4250509E-716.49202314
CGGAAGA1004.1720626E-415.74410821