FastQCFastQC Report
Mon 6 Jun 2016
ERR1391384.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391384.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences869437
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCC450.001231314624.98255511
ACCGCGC551.3743236E-424.5283269
CCGCGCC551.3743236E-424.52832610
CACCGCG602.4785186E-422.48438
GAGCGGT654.257092E-420.7547426
CTTCGTA1202.5132977E-718.7369177
TTCGTTG1354.067988E-818.410543
CCTTCGT1153.3039487E-617.6869371
TCGTTGG1459.207179E-817.1408464
CTTCGTT1204.9673963E-616.9460642
GGGCGAC800.001717738116.86419528
GGCGACA800.001717738116.86419529
CGGGATT1205.2046416E-616.86322614
AACGAAG800.001718399216.86322425
AGAGCGG800.001718399216.86322425
TGGGCGA952.833409E-416.56737927
CAACGAA1104.658621E-516.354124
GCCACCG1257.323548E-616.2682236
CGTTGGA1551.968001E-716.0349865
CGTGAGC1703.2214302E-815.9529251
Produced by FastQC (version 0.11.5)