FastQCFastQC Report
Mon 6 Jun 2016
ERR1391375.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391375.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences940843
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTCGTA1053.1256794E-517.1337477
GCGGTTC850.002573812615.87391328
GAGCGGT850.002573812615.87391326
CCGAGAC1004.1812286E-415.74246645
TCGTATA1004.1829195E-415.7416310
CGTATAA1156.8112706E-515.64385411
TTCGTAT1056.059809E-414.9920288
AGCGGTT1056.059809E-414.99202827
ACTAGAC3950.014.80304219
ATCTTCG1402.1596034E-514.5129045
CGGAGGT950.005394041514.20297333
CCTTCGT1000.007378718413.5468231
CTAGACA7200.012.4940220
TCTTCGT1558.2542235E-411.6519376
CGCCACC1558.2542235E-411.6519375
TAGACAG7250.011.47726621
GAGTTCG1400.00527579711.24402140
ATATCTT7900.011.1449313
CTCGAAC2056.180687E-511.0125026
GTTCGAG1450.00685000910.856297542
Produced by FastQC (version 0.11.5)