FastQCFastQC Report
Mon 6 Jun 2016
ERR1391374.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391374.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences860566
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT250.002110892235.9858229
ACCGGTT352.826317E-432.13019630
CGTATGC450.001230373524.98579644
AGATCGG450.001230790424.98434417
GATCGGA500.00227010622.48983218
GAGACCG602.476316E-422.48721727
ATCTCGT550.003948720620.44292440
CGGCTAA1555.3842086E-1018.8591517
CCGGCTA1801.0913936E-1118.73825816
ACGCCCG1002.0567164E-517.9887312
CGCTCCA1002.0567164E-517.988739
CGCCCGG1253.8557118E-717.98872813
CGGTTCA850.002571210715.87609729
GAGCGGT1004.1835697E-415.74105326
CGTGAGC1806.5703716E-815.0535811
GACTCCG900.003667752515.0518263
ACCACGC1806.917071E-814.9906069
ATGCCCG1056.063426E-414.99060612
GCCACCG1859.204814E-814.6450196
CCACCGC1402.2394339E-514.4569087
Produced by FastQC (version 0.11.5)