Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391373.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 824800 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 2019 | 0.2447866149369544 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGATCGG | 275 | 0.0 | 38.43424 | 17 |
TCGGAAG | 290 | 0.0 | 36.44847 | 20 |
GATCGGA | 295 | 0.0 | 35.8307 | 18 |
ATCGGAA | 295 | 0.0 | 35.8307 | 19 |
CCGATTC | 85 | 5.456968E-12 | 31.749857 | 31 |
CTCGTAT | 90 | 1.2732926E-11 | 29.985973 | 42 |
CCGAGAC | 360 | 0.0 | 29.985973 | 45 |
GAGCGGT | 375 | 0.0 | 29.384474 | 26 |
AGACCGA | 100 | 1.8189894E-12 | 29.236326 | 28 |
ATCTCGT | 95 | 2.3646862E-11 | 28.407766 | 40 |
CGTATGC | 95 | 2.3646862E-11 | 28.407766 | 44 |
GCGGTTC | 380 | 0.0 | 28.407766 | 28 |
ACCGATT | 95 | 2.3646862E-11 | 28.407766 | 30 |
TCTCGTA | 95 | 2.3646862E-11 | 28.407766 | 41 |
AGAGCGG | 385 | 0.0 | 28.037134 | 25 |
CGAGATC | 395 | 0.0 | 27.327333 | 15 |
CCGAGAT | 400 | 0.0 | 26.985743 | 14 |
AGCGGTT | 405 | 0.0 | 26.652584 | 27 |
GAGATCG | 390 | 0.0 | 26.524446 | 16 |
CGGAAGA | 400 | 0.0 | 25.862904 | 21 |