FastQCFastQC Report
Mon 6 Jun 2016
ERR1391373.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391373.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences824800
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC20190.2447866149369544Illumina Paired End PCR Primer 2 (100% over 35bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG2750.038.4342417
TCGGAAG2900.036.4484720
GATCGGA2950.035.830718
ATCGGAA2950.035.830719
CCGATTC855.456968E-1231.74985731
CTCGTAT901.2732926E-1129.98597342
CCGAGAC3600.029.98597345
GAGCGGT3750.029.38447426
AGACCGA1001.8189894E-1229.23632628
ATCTCGT952.3646862E-1128.40776640
CGTATGC952.3646862E-1128.40776644
GCGGTTC3800.028.40776628
ACCGATT952.3646862E-1128.40776630
TCTCGTA952.3646862E-1128.40776641
AGAGCGG3850.028.03713425
CGAGATC3950.027.32733315
CCGAGAT4000.026.98574314
AGCGGTT4050.026.65258427
GAGATCG3900.026.52444616
CGGAAGA4000.025.86290421