FastQCFastQC Report
Mon 6 Jun 2016
ERR1391372.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391372.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1019003
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA1105.456968E-1226.57809318
AGATCGG1159.094947E-1225.42127417
ACCGCGC551.3729946E-424.532429
TCGGAAG1252.910383E-1123.38872120
ATCGGAA1305.0931703E-1122.48915519
AACGGGT654.252994E-420.75820212
ATCTTCG1351.886292E-920.0642015
GAGCGGT1351.9754225E-919.9893826
CGCCCGG1051.4526104E-619.27547513
GCGGTTC1302.7883289E-819.0283528
CGGAAGA1555.366019E-1018.86187221
CGCGCCC600.006529991518.74004411
AGCGGTT1354.2968168E-818.32359727
CACCGCG750.001113702517.9913258
GCGCTCC1002.0547686E-517.9913238
AGAGCGG1651.2387318E-917.7178625
CGTATAA1153.4654004E-617.59934410
AAGAGCG1601.6223566E-816.86686724
TCGTATA1205.1981515E-616.866049
CCGAGAC1752.7030183E-916.70786945
Produced by FastQC (version 0.11.5)