FastQCFastQC Report
Mon 6 Jun 2016
ERR1391366.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391366.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences894559
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGACGTA207.055296E-444.9703811
GATCGGA856.519258E-926.45464118
AGATCGG901.198714E-824.98354317
GAGCGGT1156.8157533E-921.50757226
CCGAGAC1056.146729E-821.41446545
GCGGTTC1201.1128577E-820.61142228
AGCGGTT1101.0047552E-720.44107827
ATCGGAA1202.5109694E-718.73870519
TCGGAAG1253.855166E-717.98915720
CGGTTCA1253.85744E-717.98815229
TCTTCGT1601.5301339E-816.9462996
ATCTTCG1601.5301339E-816.9462995
CGGAAGA1358.6313594E-716.65662621
AGAGCGG1451.8200699E-615.50702625
AAGAGCG1602.9811417E-715.45943224
CTTCGTA1654.2254942E-714.9909647
GCGGATC950.005398310314.20117110
AATGCCG1951.842036E-713.83703910
ATGCCGA1951.842036E-713.83703911
CGTATAA1150.001207399813.68663710
Produced by FastQC (version 0.11.5)