FastQCFastQC Report
Mon 6 Jun 2016
ERR1391360.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391360.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences938959
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT556.184564E-1140.8835842
TCTCGTA556.184564E-1140.8835841
TTGGCGC300.00516250629.9812916
TCGTATG803.416062E-928.10746243
CGTATGC856.517439E-926.45548844
ATCTCGT856.521077E-926.4540840
GACCGTT856.521077E-926.4540829
ATCGGAA709.350915E-725.69961719
AGATCGG709.3552626E-725.6982517
GAGACCG952.1283995E-823.6694427
GATCGGA802.9885578E-622.48716718
TCGGAAG802.9885578E-622.48716720
ACCGTTC1003.666719E-822.48596830
AGACCGT1056.145274E-821.41520928
ACCGCGC550.00395025620.441799
CGTTCAT1151.6050762E-719.55301532
CCGTTCA1151.6050762E-719.55301531
CCACCGT707.009025E-419.2747147
CTTCGTA1202.51046E-718.7393057
ATCTTCG1253.6751408E-718.0715355