Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391360.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 938959 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 55 | 6.184564E-11 | 40.88358 | 42 |
TCTCGTA | 55 | 6.184564E-11 | 40.88358 | 41 |
TTGGCGC | 30 | 0.005162506 | 29.98129 | 16 |
TCGTATG | 80 | 3.416062E-9 | 28.107462 | 43 |
CGTATGC | 85 | 6.517439E-9 | 26.455488 | 44 |
ATCTCGT | 85 | 6.521077E-9 | 26.45408 | 40 |
GACCGTT | 85 | 6.521077E-9 | 26.45408 | 29 |
ATCGGAA | 70 | 9.350915E-7 | 25.699617 | 19 |
AGATCGG | 70 | 9.3552626E-7 | 25.69825 | 17 |
GAGACCG | 95 | 2.1283995E-8 | 23.66944 | 27 |
GATCGGA | 80 | 2.9885578E-6 | 22.487167 | 18 |
TCGGAAG | 80 | 2.9885578E-6 | 22.487167 | 20 |
ACCGTTC | 100 | 3.666719E-8 | 22.485968 | 30 |
AGACCGT | 105 | 6.145274E-8 | 21.415209 | 28 |
ACCGCGC | 55 | 0.003950256 | 20.44179 | 9 |
CGTTCAT | 115 | 1.6050762E-7 | 19.553015 | 32 |
CCGTTCA | 115 | 1.6050762E-7 | 19.553015 | 31 |
CCACCGT | 70 | 7.009025E-4 | 19.274714 | 7 |
CTTCGTA | 120 | 2.51046E-7 | 18.739305 | 7 |
ATCTTCG | 125 | 3.6751408E-7 | 18.071535 | 5 |