FastQCFastQC Report
Mon 6 Jun 2016
ERR1391358.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391358.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences923489
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTACGCC250.00211360135.97669610
TCTCGTA606.4665073E-933.72997741
CGTATGC651.4109901E-831.13536644
ATCTCGT702.9016519E-828.91141140
CTCGTAT702.9016519E-828.91141142
GATCGGA1301.8189894E-1224.21770718
TCGTATG851.9036816E-723.80939743
GAGACCG851.904682E-723.80810727
TTACGGT500.002211992222.5906286
TATCTCG1003.6654455E-822.48665239
CCGTGCA903.3060496E-722.48543531
AGACCGT1003.6674464E-822.48543528
TCGGAAG1601.8189894E-1221.08237820
AGATCGG1501.4551915E-1120.98640417
ATCGGAA1552.5465852E-1120.31162519
CGTGCAT1009.107389E-720.2368932
CGAGTAG907.966672E-620.0805595
GACCGTG1151.6054037E-719.55255129
CCGAGTA1051.3903482E-619.3633944
CGCCCGG851.2101075E-418.51741613
Produced by FastQC (version 0.11.5)