FastQCFastQC Report
Mon 6 Jun 2016
ERR1391357.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391357.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences992278
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATCA300.005160922729.98333711
AGCGCTC855.050919E-621.1668427
TCGGAAG1009.1007496E-720.23875220
CCTTCGT1351.879016E-920.06981
GATCGGA807.594022E-519.67656518
AAAGCGC1151.5364822E-719.6344935
CTTCGTT1503.2923708E-1019.5690442
TTGCGAT600.006530794318.73958618
CTTCGTA1454.796675E-918.6122237
ATCTTCG1708.731149E-1118.5950185
ATCGGAA1102.2673557E-618.39886519
TCTTCGT1751.3278623E-1018.0637326
CCGAGAC1002.0559792E-517.99000245
AGATCGG901.8732937E-417.4902817
CGTATAA1601.62363E-816.86562710
TCGTATA1601.62363E-816.8656279
TCGTTGG1803.7271093E-916.3075374
CGTTGGA1803.7271093E-916.3075375
TTCGTTG2008.8220986E-1015.8057653
TTCGTAT1754.8878064E-815.42155558
Produced by FastQC (version 0.11.5)