FastQCFastQC Report
Mon 6 Jun 2016
ERR1391356.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391356.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences782563
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTCGTA301.1429856E-437.48104541
ACCGTAT352.826876E-432.12866230
GACCGTA406.180316E-428.1125829
CGTATGC450.001229824124.98736244
TCGTATA551.3729543E-424.5314799
CCGTATT500.00226978722.49006331
CTCGTAT500.0022706322.48862642
ATCGGAA802.9858184E-622.48862519
CTTCGTA802.9874755E-622.487197
CGTATAA602.476058E-422.4871910
AGACCGT550.00394551220.44551328
ATCTCGT550.00394697320.44420640
GATCGGA951.3206998E-518.9377918
GAGACCG600.00652770818.74052227
AGAGCGG1202.5074223E-718.74052225
AGCGGTT1002.054194E-517.99090227
AGATCGG1002.0553236E-517.98975217
GAGCGGT1053.1238975E-517.13419226
CCGAGAC1053.1238975E-517.13419245
CCCGCCA1205.0103317E-616.9302963
Produced by FastQC (version 0.11.5)