Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391350.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 608145 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 40 | 1.5654228E-5 | 33.73088 | 42 |
TCTCGTA | 45 | 3.501684E-5 | 29.983006 | 41 |
ATCTCGT | 50 | 7.180589E-5 | 26.984705 | 40 |
GATCGGA | 70 | 9.341511E-7 | 25.699718 | 18 |
TCGTATG | 55 | 1.3724354E-4 | 24.531551 | 43 |
ATCGGAA | 75 | 1.7038346E-6 | 23.986404 | 19 |
TCGGAAG | 80 | 2.9855837E-6 | 22.487253 | 20 |
AGATCGG | 80 | 2.9877156E-6 | 22.485405 | 17 |
GACCGTG | 65 | 4.253653E-4 | 20.75576 | 29 |
GTTCGAG | 60 | 0.0065314714 | 18.737839 | 31 |
CGTATGC | 85 | 1.2077337E-4 | 18.520437 | 44 |
CGTGTTC | 85 | 1.2092577E-4 | 18.517391 | 32 |
GAGACCG | 75 | 0.0011142466 | 17.988325 | 27 |
AGACCGT | 75 | 0.0011142466 | 17.988325 | 28 |
CCGAGAC | 115 | 3.459203E-6 | 17.600168 | 45 |
CCTTCGT | 90 | 1.8081543E-4 | 17.56955 | 1 |
CGCCACC | 130 | 5.5365854E-7 | 17.376476 | 5 |
GAGCGGT | 135 | 8.6243745E-7 | 16.655857 | 26 |
ACGCCCA | 85 | 0.0025744229 | 15.87205 | 12 |
CGTTGGA | 100 | 4.0392354E-4 | 15.8125925 | 5 |