FastQCFastQC Report
Mon 6 Jun 2016
ERR1391350.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391350.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences608145
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTCGTAT401.5654228E-533.7308842
TCTCGTA453.501684E-529.98300641
ATCTCGT507.180589E-526.98470540
GATCGGA709.341511E-725.69971818
TCGTATG551.3724354E-424.53155143
ATCGGAA751.7038346E-623.98640419
TCGGAAG802.9855837E-622.48725320
AGATCGG802.9877156E-622.48540517
GACCGTG654.253653E-420.7557629
GTTCGAG600.006531471418.73783931
CGTATGC851.2077337E-418.52043744
CGTGTTC851.2092577E-418.51739132
GAGACCG750.001114246617.98832527
AGACCGT750.001114246617.98832528
CCGAGAC1153.459203E-617.60016845
CCTTCGT901.8081543E-417.569551
CGCCACC1305.5365854E-717.3764765
GAGCGGT1358.6243745E-716.65585726
ACGCCCA850.002574422915.8720512
CGTTGGA1004.0392354E-415.81259255