FastQCFastQC Report
Mon 6 Jun 2016
ERR1391347.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391347.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences718133
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGTAGG250.002113122335.97727213
CGTATAA602.476821E-422.48579610
CGGCTAA702.7143766E-522.48579617
GATCGGA550.003947946220.44305618
GCGCTCC550.00394953920.4416338
CGCCCGG707.0096995E-419.27353913
ATCGGAA600.00652931518.7394719
ACGCCCG600.006531940318.73816312
TCGTATA600.006531940318.7381639
CCGGCTA952.8311103E-416.5684816
CACGCCC1552.0777225E-715.95766311
AGGCGGG1004.1821634E-415.74115319
ACCACGC1754.89199E-815.4188319
CGGGGTT1502.466193E-615.0597371
CGGAGGT900.00376614414.99157433
GGCGGGC1108.619386E-414.3101420
CCCGGCT1108.62393E-414.30914315
GACCTCG1000.007575491413.49241641
CTTCGTA1000.007578981613.4914777
ACTAGAC1902.0712614E-613.01899819
Produced by FastQC (version 0.11.5)