FastQCFastQC Report
Mon 6 Jun 2016
ERR1391346.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391346.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702662
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCACCC352.8270233E-432.1278111
CCGCACC450.001229431124.98829810
ACCGCAC551.3718152E-424.5339669
TCGTTGG1109.656833E-820.5165084
ACGTGAT550.00394572220.44497317
CGTTGGA1151.5431579E-719.6244855
TGCCCGG707.001795E-419.27668813
TGGCGCG707.001795E-419.27668812
GACGGAA600.006525649718.74122224
CCACCGC1102.2635468E-618.4004757
TAGACGG750.001113131117.99157322
CGCCACC1053.0299267E-517.1947885
TTCGTTG1459.32414E-817.1206723
CCGCCAC800.001675684616.9261194
CGCGATC800.001715316316.86710215
GGCGCGA800.001715316316.86710213
GCCCGGC1358.6127693E-716.65886714
CACCGCA952.8274773E-416.5711888
CGGGATT1104.652E-516.35597814
GCGCGAT850.002571854515.87491914
Produced by FastQC (version 0.11.5)