FastQCFastQC Report
Mon 6 Jun 2016
ERR1391339.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391339.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences936887
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCTCG450.00122994424.98757620
AGATCGG901.1981683E-824.9849117
CTCGTAT500.002270849222.48881742
TCTCGTA500.002270849222.48881741
GATCGGA1056.1369064E-821.41792118
TCGGAAG1101.00317266E-720.4443820
TCGTATA1009.10386E-720.23777610
CGTATGC707.003029E-419.27715944
CGTCAAC707.0055446E-419.2761332
TCGTATG600.00652832418.74068343
ATCGGAA1202.5085137E-718.74068319
CCGAGAC1253.8492362E-717.99201645
GAGCGGT1305.813181E-717.29816626
AGCGGTT1358.6277396E-716.65749427
AGAGCGG1358.6277396E-716.65749425
CGTATAA1358.632542E-716.65660511
CTTCGTA1257.666989E-616.190228
GCGGTTC1401.2606106E-616.06344228
TTCGTAT1351.5899857E-514.9909459
AGCGCTC1056.0630974E-414.9909457
Produced by FastQC (version 0.11.5)