FastQCFastQC Report
Mon 6 Jun 2016
ERR1391338.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391338.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences960868
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGCCGT250.002113537935.97706226
GATCGGA1100.032.71152518
TCGGAAG1200.029.98556920
ATCGGAA1200.029.98556919
GACCGTG554.181322E-628.62109629
AGATCGG1350.026.64967517
CATCTCG608.230345E-626.23327639
CGGAAGA1550.023.21463221
CGGTTCA1500.022.48800529
AGACCGT702.7135507E-522.48800528
TCGTATG802.98771E-622.48800543
GCGGTTC1552.5465852E-1120.31174528
CTCGTAT908.287037E-619.98933842
CCCGCCA1251.6931153E-819.873223
TCTCGTA807.592401E-519.67700441
ACGGGAT807.598477E-519.67495513
CCGAGAC1950.019.60492745
AGAGCGG1851.6370905E-1118.23161925
CGCCACC1506.9358066E-918.0665635
CCGCCAC1406.2053005E-817.7439464
Produced by FastQC (version 0.11.5)