FastQCFastQC Report
Mon 6 Jun 2016
ERR1391337.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391337.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences757533
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGCGTT300.005161248629.98204431
CGCGTTA300.005161248629.98204432
AGATCGG755.6703357E-826.98206117
GATCGGA801.0589247E-725.29735218
ATCTTCG851.8230821E-723.9150415
ATCGGAA851.9028448E-723.8092719
TCGGAAG955.558504E-721.30303220
CGTATAA754.623591E-520.98604810
TATCTCG550.00394747720.44365139
TCGTATA807.597361E-519.674429
CCGAGAC1153.4608893E-617.60048145
GCGGTTC1305.8124897E-717.29733528
CGGTTCA1305.8124897E-717.29733529
CCGCCAC800.001666796416.9398214
TTCGTAT952.8320833E-416.5679328
TGGGCGA850.002575477815.87179927
CGCCACC1351.523846E-515.0576195
CTTCGTA1056.063997E-414.9900337
AGAGCGG1351.5901016E-514.99003325
CGGAAGA1402.240605E-514.45562921
Produced by FastQC (version 0.11.5)