FastQCFastQC Report
Mon 6 Jun 2016
ERR1391335.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391335.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences956980
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGAC406.1863585E-428.10867129
AGATCGG608.230021E-626.2333917
CGTATGC450.001230563324.98548744
CGACTTA450.001230563324.98548732
GATCGGA702.7145325E-522.48693718
TCGGAAG855.056125E-621.16417520
ATCGGAA754.6222332E-520.98780819
CTCGTAT654.2541555E-420.75717442
AAAGCGC1201.05646905E-820.7049875
GCGGATC807.5920805E-519.677124
ACCGACT600.00653157818.73911530
TCGTATG750.001114372217.9895543
AAGCGCT1406.1923856E-817.7471316
GGCGGAT901.8735658E-417.48984123
CGGATCA800.001717221716.86520425
GGGCGGA800.001717221716.86520422
TCTCGTA800.001717221716.86520441
AGCGCTC1205.202526E-616.8643237
ACGCCCG850.002575598215.87230212
GCCACCG1654.017529E-715.0581716
Produced by FastQC (version 0.11.5)