Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391332.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 776220 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGCGCCC | 35 | 2.8274144E-4 | 32.12758 | 11 |
GATCGGA | 80 | 1.0004442E-10 | 30.92678 | 18 |
AGATCGG | 85 | 2.0372681E-10 | 29.10381 | 17 |
TCGGAAG | 95 | 7.4396667E-10 | 26.043606 | 20 |
CACCGCG | 65 | 1.5277765E-5 | 24.220816 | 8 |
CCGAGAC | 125 | 7.548806E-10 | 21.591127 | 45 |
ATCGGAA | 115 | 6.7866495E-9 | 21.514284 | 19 |
CGGGGTT | 130 | 1.1841621E-9 | 20.827784 | 1 |
ACCGCGC | 65 | 4.248286E-4 | 20.7607 | 9 |
GCGCCCG | 55 | 0.003946252 | 20.444826 | 12 |
CGGAAGA | 125 | 1.7720595E-8 | 19.793142 | 21 |
AGCGGTT | 140 | 3.101377E-9 | 19.276546 | 27 |
GAGCGGT | 140 | 3.101377E-9 | 19.276546 | 26 |
CCACCGC | 130 | 2.7819624E-8 | 19.030642 | 7 |
ATCTCGT | 60 | 0.006524092 | 18.742296 | 40 |
TCGTATA | 85 | 1.2075999E-4 | 18.5218 | 10 |
GCGGTTC | 170 | 9.276846E-11 | 18.520605 | 28 |
CGGTTCA | 160 | 8.203642E-10 | 18.27256 | 29 |
CCTTCGT | 75 | 0.0010890095 | 18.050745 | 1 |
AGAGCGG | 150 | 7.2959665E-9 | 17.991446 | 25 |