FastQCFastQC Report
Mon 6 Jun 2016
ERR1391332.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391332.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences776220
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGCCC352.8274144E-432.1275811
GATCGGA801.0004442E-1030.9267818
AGATCGG852.0372681E-1029.1038117
TCGGAAG957.4396667E-1026.04360620
CACCGCG651.5277765E-524.2208168
CCGAGAC1257.548806E-1021.59112745
ATCGGAA1156.7866495E-921.51428419
CGGGGTT1301.1841621E-920.8277841
ACCGCGC654.248286E-420.76079
GCGCCCG550.00394625220.44482612
CGGAAGA1251.7720595E-819.79314221
AGCGGTT1403.101377E-919.27654627
GAGCGGT1403.101377E-919.27654626
CCACCGC1302.7819624E-819.0306427
ATCTCGT600.00652409218.74229640
TCGTATA851.2075999E-418.521810
GCGGTTC1709.276846E-1118.52060528
CGGTTCA1608.203642E-1018.2725629
CCTTCGT750.001089009518.0507451
AGAGCGG1507.2959665E-917.99144625