FastQCFastQC Report
Mon 6 Jun 2016
ERR1391330.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391330.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences714703
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCTCGT352.8258326E-432.1302140
GATCGGA554.17708E-628.62309618
AGATCGG554.1793555E-628.62109417
TCTCGTA406.178043E-428.11393541
GACCGTC406.1805715E-428.11196929
ATCGGAA654.888807E-727.67947819
CGTATGC450.001228916124.99016644
AGACCGT450.001229417524.98841728
TCGGAAG651.5281781E-524.21954220
GAGACCG500.002270805222.48827
GCGCTCC754.6184476E-520.9888028
CTCGTAT550.003944080320.44649942
ACCGTCC550.003945679420.44506830
CGCTCCA908.28217E-619.9893349
GCGGTTC807.584855E-519.6783828
GAGCGGT951.3207544E-518.93726326
CCGTCCT600.006525576618.74131431
TCGTATA600.00652821318.749
CCGAGAC851.2072678E-418.52212345
AGCGGTT851.2085638E-418.51953127
Produced by FastQC (version 0.11.5)