FastQCFastQC Report
Mon 6 Jun 2016
ERR1391328.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391328.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences702541
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACCGGT803.6379788E-1233.7298229
ACCGGTT855.456968E-1231.74571230
TCGTATG855.456968E-1231.74345243
CTCGTAT901.2732926E-1129.9799342
TATCTCG901.2732926E-1129.9799339
GGCCGAC300.005162779229.97992917
TCTCGTA952.3646862E-1128.40203941
ATCGGAA803.414243E-928.10618419
CGTATGC1004.5474735E-1126.98385644
TCGGAAG856.519258E-926.45287720
ATCTCGT1058.54925E-1125.69708340
CCGGTTC1058.54925E-1125.69708331
GAGACCG1159.094947E-1225.41957727
AGATCGG901.1978045E-824.98327417
GATCGGA952.12749E-823.66836518
AGACCGG1305.0931703E-1122.48654728
GCGGTTC1358.367351E-1121.652178
ACGCCCG550.0039503220.4408612
TCTTCGT907.946095E-620.085266
GAGCGGT1351.8590072E-920.0852586