FastQCFastQC Report
Mon 6 Jun 2016
ERR1391325.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391325.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences769132
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACGGCC250.002071337836.1242836
GACCGTT250.002111462435.98335629
GATCGCA406.04125E-428.2220954
TCGTATA1000.00757766713.4920049
CTTCGTT1352.5725254E-413.3802372
CGCCACC1352.5739477E-413.3793635
CCGCCAC1200.001613121113.170314
TTCGTAT1200.001662128613.1180788
CCTTCGT1403.4987053E-412.9023711
CGTTGGA1403.5006352E-412.9015295
TAACTGC1701.383404E-411.90548342
ACCACGC1902.9622475E-511.8350919
GCCACCA6000.011.6651336
GCTTGTA1558.5197145E-411.60753319
GAGCCAC3905.456968E-1211.5782954
TGCCACC3255.7607394E-911.1151645
GGCTAAT3552.1136657E-910.76966618
GCCCGGC1700.001845330910.58196414
TTCGTTG1750.002270807710.3212233
ACCATGC3755.2223186E-910.1939589
Produced by FastQC (version 0.11.5)