FastQCFastQC Report
Mon 6 Jun 2016
ERR1391322.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391322.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences950550
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTACCGC250.002112639635.98013727
TCGTATG1150.027.37763243
CTCGTAT1200.026.23689842
ATCGGAA1200.026.23551819
CGTATGC1159.094947E-1225.42342444
TCTCGTA1159.094947E-1225.42208741
GATCGGA1159.094947E-1225.4207518
CCGAAGA1159.094947E-1225.4207531
CGAAGAA1159.094947E-1225.4207532
ATCTCGT1201.6370905E-1124.36283340
AGACCGA1201.6370905E-1124.36155128
AGATCGG1252.910383E-1123.38708917
GACCGAA1252.910383E-1123.38708929
GAGACCG1252.910383E-1123.38708927
ACCGAAG1358.367351E-1121.65471530
TCGTATA754.621164E-520.9884139
CGCGCCC550.003948644720.4432611
CCGCTTG550.003948644720.4432630
CTTCGTA807.5903066E-519.6776737
CGAGCTG600.006379212718.8158651
Produced by FastQC (version 0.11.5)