FastQCFastQC Report
Mon 6 Jun 2016
ERR1391320.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391320.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences790660
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC800.036.5380944
TCTCGTA800.036.53577841
CTCGTAT900.032.4762542
TCGTATG900.032.4762543
CCGCTCA950.030.76697331
AGACCGC1050.029.97807528
CGCTCAA1053.6379788E-1227.83678432
TATCTCG1053.6379788E-1227.83678439
ATCTCGT1105.456968E-1226.57147640
GACCGCT1105.456968E-1226.57147629
GATCGGA1251.8189894E-1225.18317418
ACCGCTC1201.8189894E-1124.35718730
ATCGGAA1301.8189894E-1224.21459419
GAGACCG1252.910383E-1123.382927
GTATGCC1353.6379788E-1223.31775545
TCGGAAG1405.456968E-1222.48497820
AGATCGG1459.094947E-1221.7068917
CGCCCGC654.1001636E-420.8702031
CTTCGTA1051.4554334E-619.2704017
ACTAGAC3850.017.52076119