Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391318.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 900756 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC | 2011 | 0.22325690864118583 | Illumina Paired End PCR Primer 2 (100% over 35bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC | 1510 | 0.16763696272908535 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTATGC | 135 | 0.0 | 39.979225 | 44 |
CTCGTAT | 135 | 0.0 | 39.979225 | 42 |
ACCGAGA | 145 | 0.0 | 37.22204 | 30 |
TCTCGTA | 155 | 0.0 | 34.820618 | 41 |
ATCTCGT | 170 | 0.0 | 34.393894 | 40 |
TCGTATG | 160 | 0.0 | 33.73247 | 43 |
GATCGGA | 255 | 0.0 | 32.631916 | 18 |
ATCGGAA | 255 | 0.0 | 32.631916 | 19 |
AGATCGG | 265 | 0.0 | 31.398779 | 17 |
CGAGATT | 175 | 0.0 | 30.841118 | 32 |
GACCGAG | 180 | 0.0 | 29.984423 | 29 |
AGACCGA | 180 | 0.0 | 29.984423 | 28 |
TCGGAAG | 295 | 0.0 | 28.969608 | 20 |
GAGACCG | 200 | 0.0 | 28.110395 | 27 |
AATCTCG | 210 | 0.0 | 25.700932 | 39 |
GTATGCC | 225 | 0.0 | 24.987017 | 45 |
CCGAGAC | 355 | 0.0 | 24.071999 | 45 |
CGAGATC | 355 | 0.0 | 24.071999 | 15 |
GAGATCG | 360 | 0.0 | 23.112991 | 16 |
CGGAAGA | 405 | 0.0 | 20.546022 | 21 |