FastQCFastQC Report
Mon 6 Jun 2016
ERR1391318.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391318.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences900756
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC20110.22325690864118583Illumina Paired End PCR Primer 2 (100% over 35bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGATTAATCTCGTATGCC15100.16763696272908535Illumina Paired End PCR Primer 2 (97% over 34bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATGC1350.039.97922544
CTCGTAT1350.039.97922542
ACCGAGA1450.037.2220430
TCTCGTA1550.034.82061841
ATCTCGT1700.034.39389440
TCGTATG1600.033.7324743
GATCGGA2550.032.63191618
ATCGGAA2550.032.63191619
AGATCGG2650.031.39877917
CGAGATT1750.030.84111832
GACCGAG1800.029.98442329
AGACCGA1800.029.98442328
TCGGAAG2950.028.96960820
GAGACCG2000.028.11039527
AATCTCG2100.025.70093239
GTATGCC2250.024.98701745
CCGAGAC3550.024.07199945
CGAGATC3550.024.07199915
GAGATCG3600.023.11299116
CGGAAGA4050.020.54602221