FastQCFastQC Report
Mon 6 Jun 2016
ERR1391313.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391313.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418967
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA26880.6415779763083965No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC21440.5117348144364592Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC20490.4890599975654407Illumina Paired End PCR Primer 2 (97% over 34bp)
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA19810.47282960233144855No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT9080.21672351283036612Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGTCGT207.008329E-445.025845
ATCGCGG207.008329E-445.025810
AGCGTCG207.0331094E-444.99355344
CGTCATA3000.044.2436624
CCGATGA3050.043.51835617
GACGTCA3050.043.51835622
TATGCCG2150.042.90083343
GCCGATG3150.042.85116
ATGACGT3100.042.8164520
TGACGTC3150.042.13681821
GATGACG3150.042.13681819
TAAGCCG3150.042.13681813
AGCCGAT3250.041.53251315
ACGTCAT3200.041.4784323
TCGGGGA2250.040.99412514
ATTCGGT2250.040.99412521
CGATGAC3250.040.840318
AAGCCGA3300.040.22150814
TGCCGTC2300.040.1316945
TTCGGTA2300.040.1029522