Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391313.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 418967 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2688 | 0.6415779763083965 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCCGTC | 2144 | 0.5117348144364592 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATACAATCTCGTATGCC | 2049 | 0.4890599975654407 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 1981 | 0.47282960233144855 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 908 | 0.21672351283036612 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGTCGT | 20 | 7.008329E-4 | 45.0258 | 45 |
ATCGCGG | 20 | 7.008329E-4 | 45.0258 | 10 |
AGCGTCG | 20 | 7.0331094E-4 | 44.993553 | 44 |
CGTCATA | 300 | 0.0 | 44.24366 | 24 |
CCGATGA | 305 | 0.0 | 43.518356 | 17 |
GACGTCA | 305 | 0.0 | 43.518356 | 22 |
TATGCCG | 215 | 0.0 | 42.900833 | 43 |
GCCGATG | 315 | 0.0 | 42.851 | 16 |
ATGACGT | 310 | 0.0 | 42.81645 | 20 |
TGACGTC | 315 | 0.0 | 42.136818 | 21 |
GATGACG | 315 | 0.0 | 42.136818 | 19 |
TAAGCCG | 315 | 0.0 | 42.136818 | 13 |
AGCCGAT | 325 | 0.0 | 41.532513 | 15 |
ACGTCAT | 320 | 0.0 | 41.47843 | 23 |
TCGGGGA | 225 | 0.0 | 40.994125 | 14 |
ATTCGGT | 225 | 0.0 | 40.994125 | 21 |
CGATGAC | 325 | 0.0 | 40.8403 | 18 |
AAGCCGA | 330 | 0.0 | 40.221508 | 14 |
TGCCGTC | 230 | 0.0 | 40.13169 | 45 |
TTCGGTA | 230 | 0.0 | 40.10295 | 22 |