ERR1391312.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391312.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681607
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	3504	0.5140792274727225	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2736	0.401404328300619	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAACAATCTCGTATGCCGTC	1528	0.22417610147783107	Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAACAATCTCGTATGCC	1403	0.20583708794070485	Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	728	0.10680641484022317	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCCGAT	390	43.838295	15
CGATGAC	395	43.28973	18
CGTCATA	400	42.748604	24
GCCGATG	405	42.21465	16
TTCGGTA	385	42.07655	22
TCGGTAT	385	42.07655	23
GACGTCA	410	41.70596	22
CGGTATT	390	41.537106	24
GCGGTCT	375	41.392574	36
ACGTCAT	415	41.20348	23
TAAGCCG	415	41.19743	13
AAGCCGA	420	40.70698	14
AATTCGG	400	40.498676	20
TCGGGGA	385	40.317444	14
GGCGGTC	385	40.317444	35
ATGACGT	425	40.233982	20
CCGATGA	425	40.22808	17
TGCCGTC	180	40.010437	45
ATGCCGT	180	39.99283	44
TATGCCG	175	39.849995	43