Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391311.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 733887 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4079 | 0.5558076379606125 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2571 | 0.3503264126493588 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCCGTC | 1546 | 0.21065913417188203 | Illumina Paired End PCR Primer 2 (96% over 31bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAATTAGATCTCGTATGCC | 1408 | 0.19185514936223153 | Illumina Paired End PCR Primer 2 (97% over 34bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 799 | 0.10887234683268678 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGTAT | 380 | 0.0 | 43.21714 | 23 |
TTCGGTA | 385 | 0.0 | 42.65588 | 22 |
GCGGTCT | 390 | 0.0 | 42.10901 | 36 |
GGCGGTC | 390 | 0.0 | 42.10901 | 35 |
GAATTCG | 390 | 0.0 | 42.10901 | 19 |
AATTCGG | 395 | 0.0 | 41.575985 | 20 |
TAAGCCG | 395 | 0.0 | 41.575985 | 13 |
CGATGAC | 405 | 0.0 | 41.10489 | 18 |
AGCCGAT | 400 | 0.0 | 41.056282 | 15 |
CGGTCTC | 410 | 0.0 | 40.60361 | 37 |
ATTCGGT | 405 | 0.0 | 40.54942 | 21 |
AGGCGGT | 405 | 0.0 | 40.54942 | 34 |
GATGACG | 405 | 0.0 | 40.54942 | 19 |
CGGGGAA | 400 | 0.0 | 40.49387 | 15 |
GACGTCA | 410 | 0.0 | 40.054913 | 22 |
CGTCATA | 410 | 0.0 | 40.054913 | 24 |
CGGTATT | 420 | 0.0 | 39.636856 | 24 |
GCCGATG | 415 | 0.0 | 39.572323 | 16 |
ACGTCAT | 415 | 0.0 | 39.572323 | 23 |
TGACGTC | 420 | 0.0 | 39.101223 | 21 |