Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391307.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 680166 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 2646 | 0.3890226797575886 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2054 | 0.30198510363646525 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC | 1838 | 0.27022815018686613 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCC | 1647 | 0.2421467700531929 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 856 | 0.1258516303373 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGATGA | 345 | 0.0 | 43.68887 | 17 |
TCGGTAT | 380 | 0.0 | 42.628094 | 23 |
AGCCGAT | 355 | 0.0 | 42.4582 | 15 |
TAAGCCG | 355 | 0.0 | 42.4582 | 13 |
GCGGTCT | 380 | 0.0 | 42.032948 | 36 |
GCCGATG | 365 | 0.0 | 41.9113 | 16 |
CGGTATT | 385 | 0.0 | 41.490116 | 24 |
GGCGGTC | 385 | 0.0 | 41.487064 | 35 |
CGATGAC | 365 | 0.0 | 41.297997 | 18 |
CGTCATA | 365 | 0.0 | 41.297997 | 24 |
GATGACG | 370 | 0.0 | 40.739918 | 19 |
AAGCCGA | 370 | 0.0 | 40.73692 | 14 |
TTCGGTA | 395 | 0.0 | 40.43973 | 22 |
ATGCCGT | 295 | 0.0 | 40.417458 | 44 |
TGACGTC | 375 | 0.0 | 40.196716 | 21 |
AATTCGG | 400 | 0.0 | 39.93424 | 20 |
GAATTCG | 400 | 0.0 | 39.93424 | 19 |
CGGTCTC | 400 | 0.0 | 39.9313 | 37 |
ATGACGT | 380 | 0.0 | 39.66781 | 20 |
ATTCGGT | 405 | 0.0 | 39.441223 | 21 |