FastQCFastQC Report
Mon 6 Jun 2016
ERR1391307.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391307.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences680166
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA26460.3890226797575886No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA20540.30198510363646525No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCCGTC18380.27022815018686613Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTATGAAATCTCGTATGCC16470.2421467700531929Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT8560.1258516303373Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATGA3450.043.6888717
TCGGTAT3800.042.62809423
AGCCGAT3550.042.458215
TAAGCCG3550.042.458213
GCGGTCT3800.042.03294836
GCCGATG3650.041.911316
CGGTATT3850.041.49011624
GGCGGTC3850.041.48706435
CGATGAC3650.041.29799718
CGTCATA3650.041.29799724
GATGACG3700.040.73991819
AAGCCGA3700.040.7369214
TTCGGTA3950.040.4397322
ATGCCGT2950.040.41745844
TGACGTC3750.040.19671621
AATTCGG4000.039.9342420
GAATTCG4000.039.9342419
CGGTCTC4000.039.931337
ATGACGT3800.039.6678120
ATTCGGT4050.039.44122321