ERR1391306.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391306.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	511472
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	2906	0.5681640441705509	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2120	0.4144899427534645	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCCGTC	1845	0.3607235586698783	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAAGATATCTCGTATGCC	1663	0.32513998811274125	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	819	0.16012606750711672	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGCCGAT	335	44.323544	15
CCGATGA	335	44.323544	17
GCCGATG	345	43.038803	16
AAGCCGA	345	43.038803	14
CGTCATA	345	43.038803	24
TAAGCCG	350	42.423965	13
TGACGTC	355	41.826443	21
ATGACGT	355	41.826443	20
ACGTCAT	355	41.826443	23
GATGACG	355	41.826443	19
CGATGAC	355	41.826443	18
GCGGTCT	310	41.36647	36
GGCGGTC	310	41.36647	35
AGATTCG	105	40.72977	10
TATGCCG	210	40.709866	43
TTCGGTA	315	40.70986	22
GACGTCA	365	40.68051	22
TGCCGTC	205	40.625202	45
GATTCGG	100	40.515404	11
AGGCGGT	320	40.073772	34