FastQCFastQC Report
Mon 6 Jun 2016
ERR1391304.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391304.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences641713
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA37780.5887367094012432No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29350.4573695717555979No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCCGTC20650.32179494571560807Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC15570.24263183074053354Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10960.17079286222968837Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTCGTA253.886009E-545.005612
GCCGATG4000.042.74533516
CCGATGA4150.042.28454217
TGCCGTC2450.042.2633445
GATGACG4100.042.25148819
CGTCATA4100.042.25148824
TAAGCCG4050.042.21761713
CGATGAC4150.041.7424318
AGCCGAT4150.041.2003215
GACGTCA4250.040.76025822
TGACGTC4250.040.76025821
ATGACGT4250.040.76025820
ACGTCAT4300.040.286323
AAGCCGA4250.040.23090414
TTCGGTA3450.039.77826722
TATGCCG2550.039.7015543
CGGTATT3400.039.7015524
TCGGTAT3450.039.12616323
GCGGTCT3400.039.03985636
GGCGGTC3400.039.03985635