Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391304.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 641713 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 3778 | 0.5887367094012432 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2935 | 0.4573695717555979 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCCGTC | 2065 | 0.32179494571560807 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAACAAATCTCGTATGCC | 1557 | 0.24263183074053354 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1096 | 0.17079286222968837 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTCGTA | 25 | 3.886009E-5 | 45.00561 | 2 |
GCCGATG | 400 | 0.0 | 42.745335 | 16 |
CCGATGA | 415 | 0.0 | 42.284542 | 17 |
TGCCGTC | 245 | 0.0 | 42.26334 | 45 |
GATGACG | 410 | 0.0 | 42.251488 | 19 |
CGTCATA | 410 | 0.0 | 42.251488 | 24 |
TAAGCCG | 405 | 0.0 | 42.217617 | 13 |
CGATGAC | 415 | 0.0 | 41.74243 | 18 |
AGCCGAT | 415 | 0.0 | 41.20032 | 15 |
GACGTCA | 425 | 0.0 | 40.760258 | 22 |
TGACGTC | 425 | 0.0 | 40.760258 | 21 |
ATGACGT | 425 | 0.0 | 40.760258 | 20 |
ACGTCAT | 430 | 0.0 | 40.2863 | 23 |
AAGCCGA | 425 | 0.0 | 40.230904 | 14 |
TTCGGTA | 345 | 0.0 | 39.778267 | 22 |
TATGCCG | 255 | 0.0 | 39.70155 | 43 |
CGGTATT | 340 | 0.0 | 39.70155 | 24 |
TCGGTAT | 345 | 0.0 | 39.126163 | 23 |
GCGGTCT | 340 | 0.0 | 39.039856 | 36 |
GGCGGTC | 340 | 0.0 | 39.039856 | 35 |