ERR1391303.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391303.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527108
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4006	0.7599960539396101	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2678	0.5080552751997692	No Hit
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCC	2142	0.4063683343830866	Illumina Paired End PCR Primer 2 (97% over 35bp)
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATTAAGATCTCGTATGCCGTC	2031	0.3853100313408258	Illumina Paired End PCR Primer 2 (96% over 32bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	979	0.18573043854390373	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	535	0.10149722637486057	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAAGCCG	375	44.99269	13
ATGACGT	380	44.400684	20
GACGTCA	385	43.824055	22
GATGACG	390	43.262207	19
CGTCATA	390	43.262207	24
CCGATGA	395	42.714584	17
TGACGTC	395	42.714584	21
AAGCCGA	395	42.714584	14
AGCCGAT	400	42.180653	15
GCCGATG	400	42.180653	16
GAATTCG	375	41.99318	19
TATGCCG	235	41.163532	43
AATTCGG	390	40.95489	20
CGGTCTC	390	40.95489	37
GCGGTCT	385	40.90245	36
CGATGAC	420	40.707676	18
GGCGGTC	395	40.436474	35
CGGTATT	395	40.436474	24
AGGCGGT	390	40.378063	34
TGCCGTC	240	40.325085	45