ERR1391301.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391301.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	735528
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	3986	0.5419236249333812	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2701	0.3672191949184803	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCCGTC	2675	0.3636843192917197	Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGTGATCTCGTATGCC	2286	0.3107971416451855	Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1288	0.17511230027952707	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCGGTC	350	44.35372	35
AGGCGGT	360	43.121677	34
ATTCGGT	360	43.118744	21
TTCGGTA	365	42.52808	22
CGTCATA	385	42.07468	24
AGCCGAT	385	42.07182	15
GCGGTCT	370	41.956226	36
CGGTATT	370	41.956226	24
TCGGTAT	370	41.956226	23
AATTCGG	370	41.953373	20
AGATTCG	65	41.54938	10
GCCGATG	390	41.532436	16
TGCCGTC	320	41.506573	45
TATGCCG	320	41.478355	43
TTCCTCG	315	41.439465	10
TCGGGGA	375	41.393997	14
GAATTCG	370	41.345352	19
CTCGGGG	315	40.70838	13
GACGTCA	405	40.549675	22
CCGATGA	400	40.494125	17