Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391300.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 709352 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4491 | 0.6331130383786893 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 2900 | 0.4088238279443774 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCCGTC | 1408 | 0.19849101715368392 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC | 1287 | 0.18143319536703922 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 874 | 0.1232110433184089 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGATGA | 415 | 0.0 | 42.823208 | 17 |
GACGTCA | 420 | 0.0 | 42.31639 | 22 |
TAAGCCG | 430 | 0.0 | 41.852535 | 13 |
GCCGATG | 425 | 0.0 | 41.8156 | 16 |
CGATGAC | 430 | 0.0 | 41.33229 | 18 |
AGCCGAT | 430 | 0.0 | 41.329376 | 15 |
GATTCGG | 55 | 6.002665E-11 | 40.93307 | 11 |
TATGCCG | 165 | 0.0 | 40.901337 | 43 |
TGACGTC | 435 | 0.0 | 40.857204 | 21 |
ATGACGT | 450 | 0.0 | 39.995235 | 20 |
GATGACG | 445 | 0.0 | 39.939064 | 19 |
ACGTCAT | 450 | 0.0 | 39.495296 | 23 |
CGTCATA | 450 | 0.0 | 39.495296 | 24 |
AAGCCGA | 455 | 0.0 | 39.058533 | 14 |
TCGGGGA | 395 | 0.0 | 38.726837 | 14 |
TCCTCGG | 340 | 0.0 | 38.404854 | 11 |
GGCGGTC | 400 | 0.0 | 38.242752 | 35 |
AGGCGGT | 410 | 0.0 | 37.858677 | 34 |
TTCCTCG | 345 | 0.0 | 37.848263 | 10 |
CCTCGGG | 345 | 0.0 | 37.818916 | 12 |