FastQCFastQC Report
Mon 6 Jun 2016
ERR1391300.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391300.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences709352
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA44910.6331130383786893No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA29000.4088238279443774No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCCGTC14080.19849101715368392Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATGTGATCTCGTATGCC12870.18143319536703922Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT8740.1232110433184089Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCGATGA4150.042.82320817
GACGTCA4200.042.3163922
TAAGCCG4300.041.85253513
GCCGATG4250.041.815616
CGATGAC4300.041.3322918
AGCCGAT4300.041.32937615
GATTCGG556.002665E-1140.9330711
TATGCCG1650.040.90133743
TGACGTC4350.040.85720421
ATGACGT4500.039.99523520
GATGACG4450.039.93906419
ACGTCAT4500.039.49529623
CGTCATA4500.039.49529624
AAGCCGA4550.039.05853314
TCGGGGA3950.038.72683714
TCCTCGG3400.038.40485411
GGCGGTC4000.038.24275235
AGGCGGT4100.037.85867734
TTCCTCG3450.037.84826310
CCTCGGG3450.037.81891612