ERR1391294.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391294.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	730832
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4261	0.5830341309630668	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2976	0.40720712831403116	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCCGTC	2116	0.28953302537382053	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACATGATCTCGTATGCC	1693	0.23165378636950765	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1120	0.15324999452678592	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAAGCCG	510	44.552254	13
CGTCATA	525	43.279335	24
GATGACG	545	41.6911	19
TGACGTC	550	41.312088	21
GCCGATG	550	41.312088	16
CGATGAC	550	41.312088	18
CCGATGA	555	40.939907	17
AGCCGAT	560	40.57437	15
GACGTCA	560	40.57437	22
ATGACGT	560	40.57437	20
TATGCCG	240	40.306553	43
ACGTCAT	575	39.907158	23
AAGCCGA	580	39.175255	14
CGGTATT	450	38.99425	24
TCGGTAT	450	38.99425	23
TGCCGTC	250	38.70753	45
GGCGGTC	445	38.4213	35
ATGCCGT	255	37.93558	44
ATTCGGT	465	37.73637	21
TTCGGTA	465	37.73637	22