ERR1391292.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391292.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	657693
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	5182	0.7879056033742187	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3270	0.4971924590956571	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCCGTC	1982	0.3013564079289273	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGTGAATCTCGTATGCC	1798	0.27337982919082304	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	980	0.14900569110512046	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	683	0.10384784390285438	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGACGTC	535	43.733734	21
TAAGCCG	530	43.29735	13
GACGTCA	545	42.931282	22
CGTCATA	540	42.91217	24
TATGCCG	200	42.74552	43
ACGTCAT	545	42.51848	23
AGCCGAT	540	42.49555	15
ATGACGT	560	41.781338	20
ATGCCGT	205	41.70295	44
TTCGGTA	540	41.662304	22
GGCGGTC	525	41.567074	35
TCGGTAT	545	41.28008	23
AGGCGGT	530	41.17493	34
CCGATGA	565	41.0134	17
GCCGATG	560	40.97785	16
AATTCGG	550	40.904804	20
CGATGAC	570	40.653637	18
CGGTATT	550	40.495754	24
CGGTCTC	545	40.454475	37
TTCCTCG	440	40.41808	10