ERR1391291.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391291.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	565655
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4442	0.7852843164119472	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3084	0.5452086519168043	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCCGTC	2553	0.4513351778027243	Illumina Paired End PCR Primer 2 (97% over 34bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCTGAATCTCGTATGCC	1904	0.336600931663293	Illumina Paired End PCR Primer 2 (97% over 37bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1097	0.19393446535432374	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	677	0.11968425984036206	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCGGTC	420	42.31478	35
GCGGTCT	415	42.282513	36
AGCCGAT	490	42.23826	15
GATGACG	490	42.23826	19
CGATGAC	490	42.23826	18
CGTCATA	500	41.843422	24
CCGATGA	505	41.42913	17
ACGTCAT	505	41.42913	23
GCCGATG	500	41.393494	16
AAGCCGA	500	41.393494	14
TAAGCCG	500	41.393494	13
AGGCGGT	425	41.28763	34
CGGTCTC	425	41.28763	37
TCGGTAT	425	41.28763	23
GACGTCA	510	41.022964	22
TGACGTC	510	41.022964	21
TGCCGTC	265	40.77354	45
TCGGGGA	425	40.7583	14
TTCGGTA	435	40.338486	22
CGGTATT	435	40.338486	24