ERR1391290.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391290.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527946
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4701	0.8904319759975452	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3149	0.5964625169998448	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCCGTC	2114	0.400419739897641	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATGAATCTCGTATGCC	1472	0.27881639410091186	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	1001	0.18960272452106844	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	643	0.12179275910793906	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGCGGTC	400	44.431232	35
GCGGTCT	410	43.896248	36
AGCCGAT	455	43.510345	15
GACGTCA	455	43.01591	22
GCCGATG	455	43.01591	16
ACGTCAT	455	43.01591	23
CGGTATT	425	42.876305	24
CCGATGA	460	42.548347	17
GAATTCG	435	42.407814	19
AATTCGG	430	42.377743	20
AGGCGGT	425	42.34697	34
ATGACGT	465	42.090836	20
TAAGCCG	465	42.090836	13
CGTCATA	465	42.090836	24
TCCTCGG	360	41.896873	11
ATTCGGT	435	41.890644	21
TTCGGTA	435	41.890644	22
TCGGTAT	435	41.890644	23
CCTCGGG	360	41.869095	12
CGGTCTC	430	41.85456	37