Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391289.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 880898 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5062 | 0.5746408778314855 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3462 | 0.3930080440641255 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCCGTC | 2369 | 0.2689301144967976 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC | 1834 | 0.20819663570583652 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1000 | 0.11352052110460008 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGTCA | 610 | 0.0 | 43.88968 | 22 |
TGACGTC | 605 | 0.0 | 43.88053 | 21 |
AGCCGAT | 610 | 0.0 | 43.52086 | 15 |
CGTCATA | 620 | 0.0 | 43.18178 | 24 |
TAAGCCG | 620 | 0.0 | 42.81891 | 13 |
ACGTCAT | 635 | 0.0 | 42.16174 | 23 |
CCGATGA | 630 | 0.0 | 42.139244 | 17 |
AAGCCGA | 630 | 0.0 | 42.139244 | 14 |
CGATGAC | 630 | 0.0 | 42.139244 | 18 |
ATGACGT | 635 | 0.0 | 41.807438 | 20 |
GATGACG | 635 | 0.0 | 41.807438 | 19 |
TATGCCG | 295 | 0.0 | 41.18291 | 43 |
GCCGATG | 645 | 0.0 | 41.159264 | 16 |
TGCCGTC | 315 | 0.0 | 38.576878 | 45 |
ATGCCGT | 315 | 0.0 | 38.568123 | 44 |
TCGGGGA | 350 | 0.0 | 38.56812 | 14 |
TCATAAC | 695 | 0.0 | 38.198162 | 26 |
GCGGTCT | 360 | 0.0 | 37.496784 | 36 |
TCGGTAT | 365 | 0.0 | 36.983128 | 23 |
GGCGGTC | 360 | 0.0 | 36.871838 | 35 |