FastQCFastQC Report
Mon 6 Jun 2016
ERR1391289.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391289.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences880898
Sequences flagged as poor quality0
Sequence length51
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA50620.5746408778314855No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA34620.3930080440641255No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCCGTC23690.2689301144967976Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGATCGAATCTCGTATGCC18340.20819663570583652Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT10000.11352052110460008Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGTCA6100.043.8896822
TGACGTC6050.043.8805321
AGCCGAT6100.043.5208615
CGTCATA6200.043.1817824
TAAGCCG6200.042.8189113
ACGTCAT6350.042.1617423
CCGATGA6300.042.13924417
AAGCCGA6300.042.13924414
CGATGAC6300.042.13924418
ATGACGT6350.041.80743820
GATGACG6350.041.80743819
TATGCCG2950.041.1829143
GCCGATG6450.041.15926416
TGCCGTC3150.038.57687845
ATGCCGT3150.038.56812344
TCGGGGA3500.038.5681214
TCATAAC6950.038.19816226
GCGGTCT3600.037.49678436
TCGGTAT3650.036.98312823
GGCGGTC3600.036.87183835