FastQCFastQC Report
Mon 6 Jun 2016
ERR1391284.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391284.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences767971
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA55630.7243763110846634No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA36700.4778826283804987No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCCGTC11290.1470107595208673Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC9920.12917154423799856Illumina Paired End PCR Primer 2 (96% over 33bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGGTAT4400.043.9740923
TTCGGTA4450.043.48000322
CGGTATT4450.043.48000324
AGCCGAT5100.043.23216615
GAATTCG4550.043.01886419
AGGCGGT4450.042.97442234
CGATGAC5150.042.8124418
TATGCCG1000.042.74690643
CGTCATA5200.042.4007824
GCGGTCT4550.042.02992236
GGCGGTC4550.042.02992235
GCCGATG5250.041.9969616
CCGATGA5300.041.60076517
TGACGTC5300.041.60076521
AAGCCGA5300.041.60076514
GACGTCA5350.041.21197522
TAAGCCG5350.041.21197513
CGGGGAA4750.041.20754215
ATTCGGT4700.041.16723321
AATTCGG4700.041.16723320