Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391284.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 767971 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 5563 | 0.7243763110846634 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3670 | 0.4778826283804987 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCCGTC | 1129 | 0.1470107595208673 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCTAGAATCTCGTATGCC | 992 | 0.12917154423799856 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGGTAT | 440 | 0.0 | 43.97409 | 23 |
TTCGGTA | 445 | 0.0 | 43.480003 | 22 |
CGGTATT | 445 | 0.0 | 43.480003 | 24 |
AGCCGAT | 510 | 0.0 | 43.232166 | 15 |
GAATTCG | 455 | 0.0 | 43.018864 | 19 |
AGGCGGT | 445 | 0.0 | 42.974422 | 34 |
CGATGAC | 515 | 0.0 | 42.81244 | 18 |
TATGCCG | 100 | 0.0 | 42.746906 | 43 |
CGTCATA | 520 | 0.0 | 42.40078 | 24 |
GCGGTCT | 455 | 0.0 | 42.029922 | 36 |
GGCGGTC | 455 | 0.0 | 42.029922 | 35 |
GCCGATG | 525 | 0.0 | 41.99696 | 16 |
CCGATGA | 530 | 0.0 | 41.600765 | 17 |
TGACGTC | 530 | 0.0 | 41.600765 | 21 |
AAGCCGA | 530 | 0.0 | 41.600765 | 14 |
GACGTCA | 535 | 0.0 | 41.211975 | 22 |
TAAGCCG | 535 | 0.0 | 41.211975 | 13 |
CGGGGAA | 475 | 0.0 | 41.207542 | 15 |
ATTCGGT | 470 | 0.0 | 41.167233 | 21 |
AATTCGG | 470 | 0.0 | 41.167233 | 20 |