FastQCFastQC Report
Mon 6 Jun 2016
ERR1391279.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1391279.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences668088
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA45830.6859874747039313No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA32920.49274945815521315No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC30020.449342002849924Illumina Paired End PCR Primer 2 (96% over 33bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC17940.2685274993713403Illumina Paired End PCR Primer 2 (97% over 36bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT13380.20027301792578225Illumina Paired End PCR Primer 2 (96% over 30bp)

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGAC5250.042.85307718
CGTCATA5200.042.39982624
GATGACG5350.042.0520919
GCCGATG5250.041.99601416
TAAGCCG5250.041.99287413
CGGTATT3700.041.95548224
TCGGTAT3700.041.95548223
TATGCCG3550.041.8238943
AGCCGAT5300.041.59982715
GCGGTCT3750.041.39607636
CCGATGA5350.041.2110517
GACGTCA5350.041.2110522
TGACGTC5350.041.2110521
ATGACGT5350.041.2110520
ACGTCAT5350.041.2110523
TTCGGTA3800.040.85138722
ATGCCGT3650.040.67803244
AAGCCGA5450.040.4518514
AGGCGGT3850.040.32085434
TGCCGTC3700.040.1313345