Basic Statistics
Measure | Value |
---|---|
Filename | ERR1391279.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 668088 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 40 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA | 4583 | 0.6859874747039313 | No Hit |
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA | 3292 | 0.49274945815521315 | No Hit |
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCCGTC | 3002 | 0.449342002849924 | Illumina Paired End PCR Primer 2 (96% over 33bp) |
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCAGTATCTCGTATGCC | 1794 | 0.2685274993713403 | Illumina Paired End PCR Primer 2 (97% over 36bp) |
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT | 1338 | 0.20027301792578225 | Illumina Paired End PCR Primer 2 (96% over 30bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGATGAC | 525 | 0.0 | 42.853077 | 18 |
CGTCATA | 520 | 0.0 | 42.399826 | 24 |
GATGACG | 535 | 0.0 | 42.05209 | 19 |
GCCGATG | 525 | 0.0 | 41.996014 | 16 |
TAAGCCG | 525 | 0.0 | 41.992874 | 13 |
CGGTATT | 370 | 0.0 | 41.955482 | 24 |
TCGGTAT | 370 | 0.0 | 41.955482 | 23 |
TATGCCG | 355 | 0.0 | 41.82389 | 43 |
AGCCGAT | 530 | 0.0 | 41.599827 | 15 |
GCGGTCT | 375 | 0.0 | 41.396076 | 36 |
CCGATGA | 535 | 0.0 | 41.21105 | 17 |
GACGTCA | 535 | 0.0 | 41.21105 | 22 |
TGACGTC | 535 | 0.0 | 41.21105 | 21 |
ATGACGT | 535 | 0.0 | 41.21105 | 20 |
ACGTCAT | 535 | 0.0 | 41.21105 | 23 |
TTCGGTA | 380 | 0.0 | 40.851387 | 22 |
ATGCCGT | 365 | 0.0 | 40.678032 | 44 |
AAGCCGA | 545 | 0.0 | 40.45185 | 14 |
AGGCGGT | 385 | 0.0 | 40.320854 | 34 |
TGCCGTC | 370 | 0.0 | 40.13133 | 45 |