ERR1391277.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391277.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	485751
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	3887	0.800204219857499	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2638	0.5430765968572375	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCCGTC	2342	0.4821400264744694	Illumina Paired End PCR Primer 2 (96% over 31bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGTGCAATCTCGTATGCC	2093	0.4308791953078841	Illumina Paired End PCR Primer 2 (97% over 34bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	995	0.20483745787450774	Illumina Paired End PCR Primer 2 (96% over 30bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	506	0.1041685966678401	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	400	44.43364	22
TGACGTC	405	43.88508	21
CGTCATA	405	43.88508	24
CGATGAC	400	43.871185	18
TAAGCCG	400	43.871185	13
CCGATGA	405	43.32957	17
GCGGTCT	335	42.98134	36
GGCGGTC	330	42.95081	35
ACGTCAT	415	42.827602	23
GCCGATG	410	42.801155	16
TCGGTAT	340	42.34926	23
AGGCGGT	335	42.309753	34
AGCCGAT	415	42.28548	15
TGCCGTC	310	42.110455	45
ATGCCGT	315	41.424973	44
GATGACG	430	41.333614	19
AAGCCGA	425	41.290527	14
ATTCGGT	350	41.13928	21
TTCGGTA	350	41.13928	22
CGGGGAA	355	40.559853	15