ERR1391275.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391275.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	466491
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	5031	1.0784773982777802	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3232	0.6928322304181646	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCCGTC	1418	0.3039715664396526	Illumina Paired End PCR Primer 2 (96% over 32bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATAGCGATCTCGTATGCC	1070	0.22937205648126116	Illumina Paired End PCR Primer 2 (97% over 35bp)
TCAGTTTAAAGATTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	709	0.1519857832198263	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	649	0.13912379874424158	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCATA	475	44.521755	24
TAAGCCG	480	44.057987	13
ACGTCAT	490	43.61798	23
GGCGGTC	465	43.543926	35
AGCCGAT	490	43.158844	15
CCGATGA	490	43.158844	17
GACGTCA	490	43.158844	22
AATTCGG	470	43.080692	20
TCGGTAT	470	43.080692	23
TGACGTC	495	42.722897	21
GCCGATG	495	42.722897	16
AGGCGGT	480	42.651882	34
ATTCGGT	475	42.627213	21
CGGTATT	475	42.627213	24
AGATTCG	90	42.518436	10
CGATGAC	500	42.29567	18
TTCGGTA	480	42.183178	22
TCCTCGG	390	42.13365	11
AAGCCGA	505	41.876896	14
ATGACGT	505	41.876896	20