ERR1391273.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391273.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	720148
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4396	0.6104300782616906	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2798	0.3885312463549159	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCCGTC	1458	0.20245838355449158	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGACGATCTCGTATGCC	1143	0.15871737476185452	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TAAGCCG	460	43.52918	13
AAGCCGA	465	43.06113	14
CGATGAC	465	43.06113	18
TGACGTC	465	42.577297	21
CGTCATA	465	42.577297	24
GGCGGTC	345	42.387966	35
TTCGGTA	345	42.387966	22
GACGTCA	470	42.124348	22
ACGTCAT	470	42.124348	23
GCGGTCT	350	41.782425	36
AGGCGGT	350	41.782425	34
CGGTATT	350	41.782425	24
AGCCGAT	485	41.285408	15
CCGATGA	485	41.285408	17
GAATTCG	355	41.19394	19
GCCGATG	490	40.864132	16
AATTCGG	360	40.621803	20
CGGTCTC	360	40.621803	37
TCGGTAT	360	40.621803	23
ATGACGT	495	40.451363	20