ERR1391272.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391272.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	703814
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4372	0.621186847661456	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2942	0.41800816693046744	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCCGTC	1147	0.1629691935653454	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCAGACAATCTCGTATGCC	894	0.1270221962052474	Illumina Paired End PCR Primer 2 (96% over 33bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTCGGTA	465	44.507133	22
CGGTATT	470	44.033653	24
TCGGGGA	480	43.116287	14
ATTCGGT	480	43.116287	21
TCGGTAT	480	43.116287	23
TATGCCG	115	43.03478	43
GCGGTCT	485	42.67179	36
GCCGATG	520	42.395275	16
AGCCGAT	515	42.37008	15
AGGCGGT	490	42.236362	34
GGCGGTC	490	42.236362	35
GAATTCG	490	42.236362	19
CGATGAC	520	41.962673	18
CGTCATA	520	41.962673	24
AATTCGG	495	41.80973	20
TAAGCCG	530	41.170925	13
CGGTCTC	505	40.981815	37
AAGCCGA	535	40.786148	14
CCGATGA	540	40.4085	17
GACGTCA	540	40.4085	22