ERR1391271.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391271.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	639667
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4191	0.6551846507636004	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2885	0.45101591922046935	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCCGTC	1445	0.22589878796311205	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGAGTACATCTCGTATGCC	1157	0.1808753617116406	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	828	0.12944235047298047	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCATA	485	43.599915	24
GGCGGTC	455	43.01376	35
TCGGTAT	455	43.01376	23
AAGCCGA	495	42.71911	14
ACGTCAT	495	42.71911	23
TAAGCCG	495	42.71911	13
AGGCGGT	455	42.519352	34
CGGTATT	455	42.519352	24
AGCCGAT	500	42.291916	15
GCCGATG	500	42.291916	16
GATGACG	500	42.291916	19
GCGGTCT	465	42.08873	36
AATTCGG	465	42.08873	20
TATGCCG	145	41.888546	43
TGACGTC	505	41.873184	21
CGGGGAA	470	41.640976	15
TTCGGTA	470	41.640976	22
ATTCGGT	465	41.60495	21
AGATTCG	65	41.563015	10
CCGATGA	515	41.496925	17