ERR1391270.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391270.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	709584
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	5028	0.7085841845362917	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	3422	0.48225439130532816	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCCGTC	1336	0.18827932986087623	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGACTAGATCTCGTATGCC	1126	0.15868452501747501	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	818	0.11527881124715326	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	475	43.57042	22
CGTCATA	475	43.57042	24
CGATGAC	470	43.555305	18
AAGCCGA	480	43.11656	14
TAAGCCG	480	43.11656	13
TGACGTC	475	43.09683	21
ACGTCAT	485	42.67206	23
GCCGATG	485	42.208233	16
AGCCGAT	490	41.77754	15
ATGACGT	490	41.77754	20
AATTCGG	445	40.94704	20
CCGATGA	500	40.941986	17
GATGACG	500	40.941986	19
TTCGGTA	455	40.047108	22
GAATTCG	465	39.669655	19
TTCCTCG	365	39.486073	10
TATGCCG	160	39.36729	43
ATTCGGT	465	39.18588	21
TCGGTAT	465	39.18588	23
GGCGGTC	460	39.122776	35