ERR1391269.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391269.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	688563
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4487	0.6516469807410507	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2948	0.4281380207766029	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCCGTC	1267	0.18400640173811256	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGGCATAGATCTCGTATGCC	991	0.14392292353786074	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	752	0.10921295509633833	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GACGTCA	460	43.039238	22
AGCCGAT	460	43.036114	15
CCGATGA	465	42.57645	17
GCCGATG	465	42.57645	16
ACGTCAT	465	42.57645	23
TGACGTC	470	42.123512	21
CGTCATA	470	42.123512	24
TAAGCCG	470	42.120453	13
ATGACGT	475	41.680103	20
CGATGAC	475	41.680103	18
AAGCCGA	480	41.242947	14
TCGGGGA	355	40.556442	14
CGGGGAA	355	40.556442	15
TTCGGTA	360	39.996063	22
GAATTCG	360	39.996063	19
TCGGTAT	360	39.996063	23
GATGACG	505	39.204063	19
ATTCGGT	370	38.91509	21
AATTCGG	370	38.91509	20
GCGGTCT	365	38.215416	36