ERR1391268.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1391268.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	662790
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAAATA	4129	0.6229725855851778	No Hit
TCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATCCAA	2800	0.42245658504201933	No Hit
AAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCCGTC	1532	0.23114410295870486	Illumina Paired End PCR Primer 2 (96% over 30bp)
CGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGTGAGATCTCGTATGCC	1017	0.15344226678133344	Illumina Paired End PCR Primer 2 (96% over 33bp)
AAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT	881	0.13292294693643536	Illumina Paired End PCR Primer 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGATTCG	100	45.009205	10
GCCGATG	445	42.97335	16
CGGTATT	420	42.852974	24
GCGGTCT	415	42.82716	36
GATTCGG	100	42.758743	11
CGATGAC	450	42.495865	18
CAGGCGG	420	42.317314	33
TCGGTAT	420	42.317314	23
AGCCGAT	455	42.02888	15
GACGTCA	455	42.02888	22
GAATTCG	425	41.81946	19
CCGATGA	460	41.57204	17
CGTCATA	455	41.534424	24
TCGGGGA	430	41.33319	14
AATTCGG	430	41.33319	20
TTCGGTA	430	41.33319	22
GGCGGTC	425	41.290104	35
GATGACG	465	41.125034	19
ATTCGGT	435	40.858097	21
CGGGGAA	435	40.858097	15